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Approximate quantum chemical methods for modelling carbohydrate conformation and aromatic interactions: β-cyclodextrin and its adsorption on a single-layer graphene sheet

机译:用于模拟碳水化合物构象和芳香族相互作用的近似量子化学方法:β-环糊精及其在单层石墨烯片上的吸附

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摘要

Noncovalent functionalization of graphene by carbohydrates such as β-cyclodextrin (βCD) has the potential to improve graphene dispersibility and its use in biomedical applications. Here we explore the ability of approximate quantum chemical methods to accurately model βCD conformation and its interaction with graphene. We find DFTB3, SCC-DFTB and PM3CARB-1 methods to provide the best agreement with density functional theory (DFT) in calculation of relative energetics of gas-phase βCD conformers; however, the remaining NDDO-based approaches we considered underestimate the stability of the trans,gauche vicinal diol conformation. This diol orientation, corresponding to a clockwise hydrogen bonding arrangement in the glucosyl residue of βCD, is present in the lowest energy βCD conformer. Consequently, for adsorption on graphene of clockwise or counterclockwise hydrogen bonded forms of βCD, calculated with respect to this unbound conformer, the method provides closer agreement with DFT values than PM7 and PM6-DH2 approaches. These findings suggest approximate quantum chemical methods as potentially useful tools to guide the design of carbohydrate-graphene interactions, but also highlights the specific challenge to NDDO-based methods in capturing the relative energetics of carbohydrate hydrogen bond networks.
机译:碳水化合物(例如,β-环糊精(βCD))对石墨烯的非共价官能化具有改善石墨烯的分散性及其在生物医学应用中的潜力。在这里,我们探索了近似量子化学方法准确建模βCD构型及其与石墨烯相互作用的能力。我们发现,DFTB3,SCC-DFTB和PM3CARB-1方法在计算气相βCD构象异构体的相对能方面,与密度泛函理论(DFT)可以提供最佳的一致性。然而,我们认为其余基于NDDO的方法低估了反式邻位二醇构象的稳定性。该二醇取向对应于βCD的葡糖残基中的顺时针方向的氢键排列,存在于能量最低的βCD构象异构体中。因此,对于相对于该未结合构象异构体计算的顺时针或逆时针氢键结合形式的βCD吸附在石墨烯上,该方法与DFT值的关系要比PM7和PM6-DH2方法更紧密。这些发现表明,近似的量子化学方法可能是指导碳水化合物-石墨烯相互作用设计的潜在有用工具,但同时也突出了基于NDDO的方法在捕获碳水化合物氢键网络的相对能量方面的特定挑战。

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